Putting Markov Chains Back into Markov Chain Monte Carlo

Markov chain theory plays an important role in statistical inference both in the formulation of models for data and in the construction of efficient algorithms for inference. The use of Markov chains in modeling data has a long history, however the use of Markov chain theory in developing algorithms for statistical inference has only become popular recently. Using mark-recapture models as an illustration, we show how Markov chains can be used for developing demographic models and also in developing efficient algorithms for inference. We anticipate that a major area of future research involving mark-recapture data will be the development of hierarchical models that lead to better demographic models that account for all uncertainties in the analysis. A key issue is determining when the chains produced by Markov chain Monte Carlo sampling have converged.